STRINGSTRING
ycbJ protein (Escherichia coli K12 DH10B) - STRING interaction network
"ycbJ" - Hypothetical protein in Escherichia coli K12 DH10B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycbJHypothetical protein (297 aa)    
Predicted Functional Partners:
yiaF
Hypothetical protein (236 aa)
   
          0.782
mzrA
Hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR. Links the two-component systems CpxA/CpxR and EnvZ/OmpR (127 aa)
   
          0.782
ybjO
Inner membrane protein (162 aa)
   
          0.782
ampE
Regulatory protein AmpE; Putative signaling protein in beta-lactamase regulation. AmpE seems not to act as a direct sensor for beta-lactams (284 aa)
   
        0.781
yjjZ
Hypothetical protein (78 aa)
   
          0.781
ygbE
Hypothetical protein (107 aa)
   
          0.781
yjeT
Inner membrane protein (65 aa)
   
          0.780
pspG
Phage shock protein G; Effector of the phage shock response (80 aa)
   
          0.780
pgpC
Hypothetical protein; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) (211 aa)
   
          0.780
ychH
Hypothetical protein (92 aa)
   
        0.779
Your Current Organism:
Escherichia coli K12 DH10B
NCBI taxonomy Id: 316385
Other names: E. coli str. K-12 substr. DH10B, Escherichia coli DH10B, Escherichia coli K12 DH10B, Escherichia coli str. K-12 substr. DH10B, Escherichia coli str. K12 substr. DH10B, Escherichia coli strain K12 substrain DH10B
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