STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YdeSannotation not available (176 aa)    
Predicted Functional Partners:
YdeT
annotation not available
 
   0.962
YdeR
annotation not available
 
     0.957
YdeQ
annotation not available
 
     0.914
FimC
annotation not available
  
   0.798
FimD
annotation not available
 
   0.796
FimH
annotation not available
  
   
 0.743
FimG
annotation not available
  
     0.704
YcbR
annotation not available
  
   0.684
HtrE
annotation not available
 
   0.641
EcpD
annotation not available
  
   0.627
Your Current Organism:
Escherichia coli K12 W3110
NCBI taxonomy Id: 316407
Other names: E. coli str. K-12 substr. W3110, Escherichia coli K12 substr. W3110, Escherichia coli W3110, Escherichia coli str. K-12 substr. W3110, Escherichia coli str. K12 substr. W3110, Escherichia coli str. W3110, Escherichia coli strain W3110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.