STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YpdJannotation not available (46 aa)    
Predicted Functional Partners:
YfdR
annotation not available
       0.845
YfdS
annotation not available
       0.845
YfdT
annotation not available
       0.845
TorI
annotation not available
       0.616
YfdQ
annotation not available
       0.534
YfdP
annotation not available
       0.417
Your Current Organism:
Escherichia coli K12 W3110
NCBI taxonomy Id: 316407
Other names: E. coli str. K-12 substr. W3110, Escherichia coli K12 substr. W3110, Escherichia coli W3110, Escherichia coli str. K-12 substr. W3110, Escherichia coli str. K12 substr. W3110, Escherichia coli str. W3110, Escherichia coli strain W3110
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