STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_0846Carboxysome shell peptide CsoS1; PFAM: microcompartments protein; KEGG: pmt:PMT1206 carboxysome shell protein CsoS1. (102 aa)    
Predicted Functional Partners:
Tcr_0842
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: pmm:PMM0554 putative carboxysome peptide A.
 
 
 
 0.912
Tcr_0843
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: pmt:PMT1200 putative carboxysome peptide B.
 
 
 
 0.898
Tcr_0851
KEGG: pmt:PMT1208 hypothetical protein.
 
 
 
 0.730
Tcr_0845
Carboxysome shell peptide CsoS1; PFAM: microcompartments protein; KEGG: pmt:PMT1206 carboxysome shell protein CsoS1.
 
   
0.697
Tcr_0847
Bacterioferritin (BFR); PFAM: Rubrerythrin; KEGG: rpa:RPA3600 bacterioferritin.
 
     0.670
Tcr_0841
KEGG: pmt:PMT1202 carboxysome shell protein CsoS3.
 
   
 0.659
Tcr_0844
Carboxysome shell peptide CsoS1; PFAM: microcompartments protein; KEGG: pmt:PMT1206 carboxysome shell protein CsoS1.
 
   
0.640
Tcr_0840
KEGG: syw:SYNW1716 putative carboxysome structural peptide CsoS2.
 
   
 0.617
Tcr_0848
Pterin-4-alpha-carbinolamine dehydratase; KEGG: pmt:PMT1198 hypothetical protein.
       0.616
Tcr_0839
PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: pmt:PMT1204 ribulose bisphosphate carboxylase, small chain.
   
 
 0.456
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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