STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcr_1039PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: pst:PSPTO1964 response regulator. (567 aa)    
Predicted Functional Partners:
Tcr_1038
Anti-sigma-factor antagonist (STAS) domain protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein.
 
 
  0.993
Tcr_1390
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pst:PSPTO1963 STAS domain protein.
  
 
  0.976
Tcr_0165
PFAM: Hpt; KEGG: pae:PA3345 hypothetical protein.
 
 0.921
Tcr_1383
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt; KEGG: bba:Bd3528 signal transduction histidine kinase.
 
 
 0.912
Tcr_1041
PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like; KEGG: rba:RB3606 probable sensor protein FixL.
 
   0.891
Tcr_2068
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: gka:GK1468 hypothetical protein.
 
 
 0.883
Tcr_1040
Response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like; KEGG: lpf:lpl0329 hypothetical protein.
   
 
 0.854
Tcr_2180
PAS/PAC sensor hybrid histidine kinase; KEGG: pae:PA3946 probable two-component sensor; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3 response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS.
 
 
 0.851
Tcr_1913
KEGG: mac:MA2013 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS domain containing protein+B6621 ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAC motif.
 
 
 0.810
Tcr_1445
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: neu:NE2082 putative two-component sensor.
  
   0.773
Your Current Organism:
Hydrogenovibrio crunogenus
NCBI taxonomy Id: 317025
Other names: H. crunogenus XCL-2, Hydrogenovibrio crunogenus XCL-2, Thiomicrospira crunogena XCL-2
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