STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sala_0747Gluconolactonase. (284 aa)    
Predicted Functional Partners:
Sala_3160
Gluconolactonase.
  
  
 
0.910
Sala_0746
Transcriptional regulator, GntR family.
 
   
 0.836
Sala_0743
2-keto-3-deoxygalactonate kinase.
 
   
 0.814
Sala_0744
2-keto-3-deoxy-phosphogalactonate aldolase.
 
   
 0.725
Sala_0745
Galactose 1-dehydrogenase.
 
  
 0.712
Sala_0742
Galactonate dehydratase.
 
  
 0.614
Your Current Organism:
Sphingopyxis alaskensis
NCBI taxonomy Id: 317655
Other names: S. alaskensis RB2256, Sphingopyxis alaskensis RB2256, Sphingopyxis alaskensis str. RB2256, Sphingopyxis alaskensis strain RB2256
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.