Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sden_0096 | Sden_0098 | Sden_0096 | Sden_0098 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | PfkB. | 0.565 |
Sden_0096 | rlmF | Sden_0096 | Sden_0097 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.774 |
Sden_0096 | ubiC | Sden_0096 | Sden_0095 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.583 |
Sden_0098 | Sden_0096 | Sden_0098 | Sden_0096 | PfkB. | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.565 |
Sden_0098 | rlmF | Sden_0098 | Sden_0097 | PfkB. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.565 |
Sden_1415 | Sden_1749 | Sden_1415 | Sden_1749 | Protein of unknown function DUF45. | Conserved hypothetical protein. | 0.403 |
Sden_1415 | rlmF | Sden_1415 | Sden_0097 | Protein of unknown function DUF45. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.493 |
Sden_1449 | rlmF | Sden_1449 | Sden_0097 | Conserved hypothetical protein. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.440 |
Sden_1749 | Sden_1415 | Sden_1749 | Sden_1415 | Conserved hypothetical protein. | Protein of unknown function DUF45. | 0.403 |
Sden_1749 | rlmF | Sden_1749 | Sden_0097 | Conserved hypothetical protein. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.430 |
rlmF | Sden_0096 | Sden_0097 | Sden_0096 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.774 |
rlmF | Sden_0098 | Sden_0097 | Sden_0098 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | PfkB. | 0.565 |
rlmF | Sden_1415 | Sden_0097 | Sden_1415 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Protein of unknown function DUF45. | 0.493 |
rlmF | Sden_1449 | Sden_0097 | Sden_1449 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Conserved hypothetical protein. | 0.440 |
rlmF | Sden_1749 | Sden_0097 | Sden_1749 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Conserved hypothetical protein. | 0.430 |
rlmF | ubiC | Sden_0097 | Sden_0095 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.528 |
ubiC | Sden_0096 | Sden_0095 | Sden_0096 | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.583 |
ubiC | rlmF | Sden_0095 | Sden_0097 | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.528 |