Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sden_0383 | msbA | Sden_0383 | Sden_2199 | ABC transporter related. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.746 |
Sden_0474 | Sden_3532 | Sden_0474 | Sden_3532 | Colicin V processing peptidase. Cysteine peptidase. MEROPS family C39. | Amino acid adenylation. | 0.449 |
Sden_0474 | Sden_3534 | Sden_0474 | Sden_3534 | Colicin V processing peptidase. Cysteine peptidase. MEROPS family C39. | Amino acid adenylation. | 0.403 |
Sden_0474 | msbA | Sden_0474 | Sden_2199 | Colicin V processing peptidase. Cysteine peptidase. MEROPS family C39. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.748 |
Sden_1639 | Sden_2838 | Sden_1639 | Sden_2838 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | 0.735 |
Sden_1639 | Sden_3532 | Sden_1639 | Sden_3532 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Amino acid adenylation. | 0.870 |
Sden_1639 | msbA | Sden_1639 | Sden_2199 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.671 |
Sden_2197 | Sden_2200 | Sden_2197 | Sden_2200 | Protein of unknown function DUF343; Belongs to the UPF0434 family. | DNA internalization-related competence protein ComEC/Rec2. | 0.763 |
Sden_2197 | lpxK | Sden_2197 | Sden_2198 | Protein of unknown function DUF343; Belongs to the UPF0434 family. | lipid-A-disaccharide synthase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.814 |
Sden_2197 | msbA | Sden_2197 | Sden_2199 | Protein of unknown function DUF343; Belongs to the UPF0434 family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.785 |
Sden_2200 | Sden_2197 | Sden_2200 | Sden_2197 | DNA internalization-related competence protein ComEC/Rec2. | Protein of unknown function DUF343; Belongs to the UPF0434 family. | 0.763 |
Sden_2200 | lpxK | Sden_2200 | Sden_2198 | DNA internalization-related competence protein ComEC/Rec2. | lipid-A-disaccharide synthase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.761 |
Sden_2200 | msbA | Sden_2200 | Sden_2199 | DNA internalization-related competence protein ComEC/Rec2. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.712 |
Sden_2200 | potA | Sden_2200 | Sden_3030 | DNA internalization-related competence protein ComEC/Rec2. | Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. | 0.434 |
Sden_2838 | Sden_1639 | Sden_2838 | Sden_1639 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.735 |
Sden_2838 | Sden_3532 | Sden_2838 | Sden_3532 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Amino acid adenylation. | 0.689 |
Sden_2838 | msbA | Sden_2838 | Sden_2199 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.679 |
Sden_3532 | Sden_0474 | Sden_3532 | Sden_0474 | Amino acid adenylation. | Colicin V processing peptidase. Cysteine peptidase. MEROPS family C39. | 0.449 |
Sden_3532 | Sden_1639 | Sden_3532 | Sden_1639 | Amino acid adenylation. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.870 |
Sden_3532 | Sden_2838 | Sden_3532 | Sden_2838 | Amino acid adenylation. | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | 0.689 |
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