STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_2594Pterin-4-alpha-carbinolamine dehydratase. (112 aa)    
Predicted Functional Partners:
Sden_2595
Phenylalanine 4-hydroxylase.
 
 0.997
Sden_2163
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.894
Sden_2162
Homogentisate 1,2-dioxygenase.
  
  
 0.787
Sden_1668
Aminotransferase.
  
  
 0.752
Sden_1750
Aminotransferase.
  
  
 0.657
Sden_2593
Transcriptional regulator, TyrR.
     
 0.574
Sden_2592
Fumarylacetoacetate (FAA) hydrolase.
  
  
 0.514
Sden_2591
Maleylacetoacetate isomerase.
  
  
 0.513
Sden_2747
Prephenate dehydratase / chorismate mutase.
     
 0.481
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
  
  
 0.425
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.