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trmB protein (Shewanella denitrificans) - STRING interaction network
"trmB" - tRNA in Shewanella denitrificans
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (238 aa)    
Predicted Functional Partners:
Sden_2696
Hypothetical protein (108 aa)
   
        0.820
Sden_2698
A/G-specific adenine glycosylase (357 aa)
   
   
  0.818
trmL
RNA methyltransferase TrmH, group 2; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2’-OH of the wobble nucleotide (153 aa)
 
   
  0.745
Sden_2699
Hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes (91 aa)
              0.736
truD
Pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs (362 aa)
   
 
  0.734
Sden_2301
Pseudouridine synthase, RluD; Responsible for synthesis of pseudouridine from uracil (318 aa)
 
   
  0.720
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (267 aa)
   
   
  0.712
Sden_2643
Fmu (Sun) (464 aa)
   
 
  0.707
rsmF
rRNA (cytosine-C(5)-)-methyltransferase RsmF; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA (505 aa)
   
 
  0.707
Sden_1739
Fmu (Sun) (404 aa)
   
 
  0.707
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans, Shewanella denitrificans Brettar et al. 2002, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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