Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sden_0303 | Sden_0452 | Sden_0303 | Sden_0452 | Porphobilinogen synthase; Belongs to the ALAD family. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.908 |
Sden_0303 | Sden_3532 | Sden_0303 | Sden_3532 | Porphobilinogen synthase; Belongs to the ALAD family. | Amino acid adenylation. | 0.714 |
Sden_0303 | hemA | Sden_0303 | Sden_0919 | Porphobilinogen synthase; Belongs to the ALAD family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.873 |
Sden_0303 | hemC | Sden_0303 | Sden_0388 | Porphobilinogen synthase; Belongs to the ALAD family. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.996 |
Sden_0303 | hemE | Sden_0303 | Sden_0468 | Porphobilinogen synthase; Belongs to the ALAD family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.670 |
Sden_0303 | hemL | Sden_0303 | Sden_2819 | Porphobilinogen synthase; Belongs to the ALAD family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.994 |
Sden_0452 | Sden_0303 | Sden_0452 | Sden_0303 | Porphobilinogen synthase; Belongs to the ALAD family. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.908 |
Sden_0452 | Sden_3532 | Sden_0452 | Sden_3532 | Porphobilinogen synthase; Belongs to the ALAD family. | Amino acid adenylation. | 0.714 |
Sden_0452 | hemA | Sden_0452 | Sden_0919 | Porphobilinogen synthase; Belongs to the ALAD family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.870 |
Sden_0452 | hemC | Sden_0452 | Sden_0388 | Porphobilinogen synthase; Belongs to the ALAD family. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.997 |
Sden_0452 | hemE | Sden_0452 | Sden_0468 | Porphobilinogen synthase; Belongs to the ALAD family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.736 |
Sden_0452 | hemL | Sden_0452 | Sden_2819 | Porphobilinogen synthase; Belongs to the ALAD family. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.992 |
Sden_1176 | Sden_1177 | Sden_1176 | Sden_1177 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1176 | Sden_3532 | Sden_1176 | Sden_3532 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1176 | Sden_3534 | Sden_1176 | Sden_3534 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1176 | Sden_3733 | Sden_1176 | Sden_3733 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1176 | hemL | Sden_1176 | Sden_2819 | Amino acid adenylation. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.721 |
Sden_1177 | Sden_1176 | Sden_1177 | Sden_1176 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1177 | Sden_3532 | Sden_1177 | Sden_3532 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1177 | Sden_3534 | Sden_1177 | Sden_3534 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
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