Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sden_2973 | Sden_2974 | Sden_2973 | Sden_2974 | Deoxyribonuclease I. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.771 |
Sden_2973 | Sden_2976 | Sden_2973 | Sden_2976 | Deoxyribonuclease I. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.690 |
Sden_2973 | gshB | Sden_2973 | Sden_2975 | Deoxyribonuclease I. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.672 |
Sden_2973 | rsmC | Sden_2973 | Sden_2977 | Deoxyribonuclease I. | 16S rRNA m(2)G 1207 methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. | 0.502 |
Sden_2974 | Sden_2973 | Sden_2974 | Sden_2973 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Deoxyribonuclease I. | 0.771 |
Sden_2974 | Sden_2976 | Sden_2974 | Sden_2976 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.655 |
Sden_2974 | gshB | Sden_2974 | Sden_2975 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.744 |
Sden_2974 | prmA | Sden_2974 | Sden_0446 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | LSU ribosomal protein L11P methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.886 |
Sden_2974 | rsmC | Sden_2974 | Sden_2977 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 16S rRNA m(2)G 1207 methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. | 0.574 |
Sden_2976 | Sden_2973 | Sden_2976 | Sden_2973 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Deoxyribonuclease I. | 0.690 |
Sden_2976 | Sden_2974 | Sden_2976 | Sden_2974 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.655 |
Sden_2976 | gshB | Sden_2976 | Sden_2975 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.773 |
Sden_2976 | rsmC | Sden_2976 | Sden_2977 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 16S rRNA m(2)G 1207 methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. | 0.506 |
gshB | Sden_2973 | Sden_2975 | Sden_2973 | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | Deoxyribonuclease I. | 0.672 |
gshB | Sden_2974 | Sden_2975 | Sden_2974 | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.744 |
gshB | Sden_2976 | Sden_2975 | Sden_2976 | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.773 |
gshB | rsmC | Sden_2975 | Sden_2977 | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 16S rRNA m(2)G 1207 methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. | 0.506 |
nusA | rplA | Sden_1006 | Sden_0160 | NusA antitermination factor; Participates in both transcription termination and antitermination. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.917 |
nusA | rpoB | Sden_1006 | Sden_0163 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
nusA | rsmC | Sden_1006 | Sden_2977 | NusA antitermination factor; Participates in both transcription termination and antitermination. | 16S rRNA m(2)G 1207 methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. | 0.616 |
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