STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_3248Gifsy-2 prophage; putative RecA/RadA recombinase. (106 aa)    
Predicted Functional Partners:
Sden_3249
ATP-dependent Clp protease proteolytic subunit ClpP; Belongs to the peptidase S14 family.
 
    0.921
Sden_3250
Phage portal protein, lambda.
 
    0.915
Sden_3252
Phage terminase GpA.
 
    0.786
Sden_3246
Hypothetical protein.
       0.773
Sden_3247
Hypothetical protein.
       0.773
Sden_3244
Conserved hypothetical protein.
       0.750
Sden_3245
Hypothetical protein.
       0.723
Sden_3243
Phage tail tape measure protein TP901, core region.
       0.559
Sden_3256
Glycoside hydrolase, family 24.
 
     0.465
Sden_3251
Conserved hypothetical protein.
       0.457
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.