node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sfri_0022 | Sfri_2123 | Sfri_0022 | Sfri_2123 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.794 |
Sfri_0022 | rlmC | Sfri_0022 | Sfri_0579 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.408 |
Sfri_0022 | rlmL | Sfri_0022 | Sfri_2661 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.529 |
Sfri_0022 | rsmF | Sfri_0022 | Sfri_2236 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Putative RNA methylase, NOL1/NOP2/sun family protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 0.456 |
Sfri_0022 | trmB | Sfri_0022 | Sfri_2872 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.654 |
Sfri_0577 | Sfri_0578 | Sfri_0577 | Sfri_0578 | KEGG: son:SO0974 hypothetical protein. | PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family. | 0.517 |
Sfri_0577 | rlmC | Sfri_0577 | Sfri_0579 | KEGG: son:SO0974 hypothetical protein. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.517 |
Sfri_0578 | Sfri_0577 | Sfri_0578 | Sfri_0577 | PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family. | KEGG: son:SO0974 hypothetical protein. | 0.517 |
Sfri_0578 | Sfri_0580 | Sfri_0578 | Sfri_0580 | PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family. | TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative. | 0.455 |
Sfri_0578 | rlmC | Sfri_0578 | Sfri_0579 | PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.773 |
Sfri_0580 | Sfri_0578 | Sfri_0580 | Sfri_0578 | TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative. | PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family. | 0.455 |
Sfri_0580 | rlmC | Sfri_0580 | Sfri_0579 | TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: son:SO0986 chromate transporter, putative. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.455 |
Sfri_0664 | rlmC | Sfri_0664 | Sfri_0579 | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.464 |
Sfri_2123 | Sfri_0022 | Sfri_2123 | Sfri_0022 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.794 |
Sfri_2123 | rlmC | Sfri_2123 | Sfri_0579 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.416 |
Sfri_2123 | rsmF | Sfri_2123 | Sfri_2236 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Putative RNA methylase, NOL1/NOP2/sun family protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. | 0.455 |
prfC | rlmC | Sfri_0997 | Sfri_0579 | Bacterial peptide chain release factor 3 (bRF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | 0.430 |
prfC | rlmL | Sfri_0997 | Sfri_2661 | Bacterial peptide chain release factor 3 (bRF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.510 |
rlmC | Sfri_0022 | Sfri_0579 | Sfri_0022 | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.408 |
rlmC | Sfri_0577 | Sfri_0579 | Sfri_0577 | 23S rRNA (uracil-5-)-methyltransferase RumB; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. | KEGG: son:SO0974 hypothetical protein. | 0.517 |