STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1329PFAM: transcriptional coactivator/pterin dehydratase; KEGG: son:SO1667 pterin-4-alpha-carbinolamine dehydratase. (112 aa)    
Predicted Functional Partners:
Sfri_1328
KEGG: son:SO1666 phenylalanine-4-hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase.
 
 0.996
Sfri_2327
KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.785
Sfri_2024
PFAM: aminotransferase, class I and II; KEGG: son:SO2350 aspartate aminotransferase.
  
  
 0.717
Sfri_2326
PFAM: homogentisate 1,2-dioxygenase; KEGG: son:SO1963 homogentisate 1,2-dioxygenase.
  
  
 0.697
Sfri_2126
PFAM: aminotransferase, class I and II; KEGG: son:SO2406 aspartate aminotransferase.
  
  
 0.623
Sfri_1330
Transcriptional regulator, TyrR; PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR.
     
 0.555
Sfri_2913
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase.
     
 0.554
Sfri_1332
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein.
  
  
 0.492
Sfri_1331
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein.
  
  
 0.480
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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