STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3106PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3282 putative hexuronate transporter. (428 aa)    
Predicted Functional Partners:
Sfri_3105
PFAM: Cupin 2, conserved barrel domain protein; KEGG: pha:PSHAa1747 pectin degradation protein (sugar phosphate isomerase).
 
     0.948
Sfri_3103
KEGG: pha:PSHAa1749 alginate lyase precursor.
 
    0.929
Sfri_3104
PFAM: Heparinase II/III family protein; KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase.
 
    0.929
Sfri_3107
2-keto-3-deoxygluconate kinase; PFAM: PfkB domain protein; KEGG: pha:PSHAa1745 ketodeoxygluconokinase.
 
  
 0.847
Sfri_3102
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pha:PSHAa1739 regulatory protein, GntR.
 
   
 0.771
Sfri_0636
PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein.
  
  
 0.666
Sfri_2079
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor.
  
  
 0.622
Sfri_3695
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: gsu:GSU3396 transcriptional regulator, GntR family.
 
   
 0.537
Sfri_3108
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase.
 
     0.517
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.486
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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