node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pden_0006 | Pden_0007 | Pden_0006 | Pden_0007 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | 0.978 |
Pden_0006 | mnmE | Pden_0006 | Pden_0003 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.812 |
Pden_0006 | mnmG | Pden_0006 | Pden_0004 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.815 |
Pden_0006 | rho | Pden_0006 | Pden_0002 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.772 |
Pden_0006 | rsmG | Pden_0006 | Pden_0005 | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.855 |
Pden_0007 | Pden_0006 | Pden_0007 | Pden_0006 | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | 0.978 |
Pden_0007 | mnmE | Pden_0007 | Pden_0003 | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.916 |
Pden_0007 | mnmG | Pden_0007 | Pden_0004 | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.878 |
Pden_0007 | rho | Pden_0007 | Pden_0002 | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.875 |
Pden_0007 | rsmG | Pden_0007 | Pden_0005 | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.939 |
ileS | mnmE | Pden_3612 | Pden_0003 | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.468 |
ileS | mnmG | Pden_3612 | Pden_0004 | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.607 |
mnmA | mnmE | Pden_4098 | Pden_0003 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.806 |
mnmA | mnmG | Pden_4098 | Pden_0004 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.773 |
mnmA | rnpA | Pden_4098 | Pden_0873 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.476 |
mnmA | rsmG | Pden_4098 | Pden_0005 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.476 |
mnmE | Pden_0006 | Pden_0003 | Pden_0006 | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sit:TM1040_2867 cobyrinic acid a,c-diamide synthase. | 0.812 |
mnmE | Pden_0007 | Pden_0003 | Pden_0007 | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family. | 0.916 |
mnmE | ileS | Pden_0003 | Pden_3612 | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.468 |
mnmE | mnmA | Pden_0003 | Pden_4098 | tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.806 |