STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0137PFAM: Lytic transglycosylase, catalytic; KEGG: mes:Meso_0517 lytic transglycosylase, catalytic. (231 aa)    
Predicted Functional Partners:
Pden_0136
PFAM: protein of unknown function DUF736; KEGG: mes:Meso_3845 conjugal transfer protein precursor.
 
     0.833
Pden_0138
Hypothetical protein.
       0.615
Pden_0139
KEGG: bja:bll0044 hypothetical protein.
 
   
 0.608
Pden_2109
ATPase, FliI/YscN family; KEGG: rsp:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
 
  
 0.523
Pden_3172
KEGG: mes:Meso_0527 hypothetical protein.
  
     0.506
Pden_1404
PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_2289 flagellar motor protein.
 
  
 0.496
Pden_3367
KEGG: nwi:Nwi_0844 hypothetical protein.
  
     0.470
Pden_0129
KEGG: nwi:Nwi_0844 hypothetical protein.
  
     0.468
Pden_1507
KEGG: bja:bll0044 hypothetical protein.
 
   
 0.433
Pden_0135
Hypothetical protein.
       0.420
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.