STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0495PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rde:RD1_0413 response regulator. (423 aa)    
Predicted Functional Partners:
Pden_0496
PFAM: Hpt domain protein; KEGG: sit:TM1040_2886 Hpt protein.
 
 
 0.998
Pden_0819
KEGG: jan:Jann_4052 putative anti-sigma regulatory factor (serine/threonine protein kinase).
 
 
 0.996
Pden_0820
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rsp:RSP_1501 antisigma-factor antagonist (STAS) domain protein; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.994
Pden_3719
PFAM: Heme NO binding domain protein; KEGG: rsp:RSP_6114 hypothetical protein.
 
  
 0.986
Pden_2352
Histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_2593 hybrid histidine kinase.
 
 
 0.974
Pden_4348
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pau:PA14_46370 putative two-component sensor.
 
 
 0.973
Pden_4464
PFAM: flagellar motor switch protein FliG; KEGG: rsp:RSP_2220 possible flagellar motor switch protein (FliG).
  
  
 0.948
Pden_1956
TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: mca:MCA2070 sensory box protein.
  
 
 0.934
Pden_2646
KEGG: rsp:RSP_1315 hypothetical protein.
   
    0.932
Pden_2110
KEGG: rsp:RSP_1331 flagellar basal-body rod protein FlgB.
   
    0.929
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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