node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pden_0436 | Pden_0510 | Pden_0436 | Pden_0510 | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.757 |
Pden_0509 | Pden_0510 | Pden_0509 | Pden_0510 | PFAM: protein of unknown function DUF1289; KEGG: jan:Jann_2180 protein of unknown function DUF1289. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.868 |
Pden_0509 | Pden_0511 | Pden_0509 | Pden_0511 | PFAM: protein of unknown function DUF1289; KEGG: jan:Jann_2180 protein of unknown function DUF1289. | KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH. | 0.909 |
Pden_0509 | Pden_0512 | Pden_0509 | Pden_0512 | PFAM: protein of unknown function DUF1289; KEGG: jan:Jann_2180 protein of unknown function DUF1289. | TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit. | 0.511 |
Pden_0510 | Pden_0436 | Pden_0510 | Pden_0436 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | PFAM: protein of unknown function DUF179; KEGG: sil:SPO0296 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.757 |
Pden_0510 | Pden_0509 | Pden_0510 | Pden_0509 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | PFAM: protein of unknown function DUF1289; KEGG: jan:Jann_2180 protein of unknown function DUF1289. | 0.868 |
Pden_0510 | Pden_0511 | Pden_0510 | Pden_0511 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH. | 0.886 |
Pden_0510 | Pden_0512 | Pden_0510 | Pden_0512 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit. | 0.512 |
Pden_0510 | Pden_0624 | Pden_0510 | Pden_0624 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.448 |
Pden_0510 | Pden_3411 | Pden_0510 | Pden_3411 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Hypothetical protein; KEGG: ccr:CC1457 flagellin modification protein FlmG. | 0.489 |
Pden_0510 | alaS | Pden_0510 | Pden_0598 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.662 |
Pden_0510 | ispDF | Pden_0510 | Pden_3667 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. | 0.513 |
Pden_0510 | miaA | Pden_0510 | Pden_3992 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.579 |
Pden_0510 | topA | Pden_0510 | Pden_0659 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.595 |
Pden_0511 | Pden_0509 | Pden_0511 | Pden_0509 | KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH. | PFAM: protein of unknown function DUF1289; KEGG: jan:Jann_2180 protein of unknown function DUF1289. | 0.909 |
Pden_0511 | Pden_0510 | Pden_0511 | Pden_0510 | KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.886 |
Pden_0511 | Pden_0512 | Pden_0511 | Pden_0512 | KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH. | TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit. | 0.511 |
Pden_0512 | Pden_0509 | Pden_0512 | Pden_0509 | TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit. | PFAM: protein of unknown function DUF1289; KEGG: jan:Jann_2180 protein of unknown function DUF1289. | 0.511 |
Pden_0512 | Pden_0510 | Pden_0512 | Pden_0510 | TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.512 |
Pden_0512 | Pden_0511 | Pden_0512 | Pden_0511 | TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rsp:RSP_2686 putative sarcosine oxidase beta subunit. | KEGG: rsp:RSP_2685 putative cytochrome c-type biogenesis protein, CycH. | 0.511 |