STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1596PFAM: ABC-3 protein; KEGG: mlo:mll8314 ABC transporter, permease protein. (288 aa)    
Predicted Functional Partners:
Pden_1597
PFAM: periplasmic solute binding protein; KEGG: atc:AGR_L_3262 adhesin, probable; Belongs to the bacterial solute-binding protein 9 family.
  
 0.986
Pden_1595
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll8315 ABC transporter, ATP-binding protein.
 
 
 0.981
Pden_1259
PFAM: periplasmic solute binding protein; KEGG: rsp:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA; Belongs to the bacterial solute-binding protein 9 family.
  
 0.933
Pden_4140
PFAM: periplasmic solute binding protein; KEGG: rsp:RSP_3571 ABC zinc transporter, periplasmic binding protein ZnuA.
 
  
 0.882
Pden_1258
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02508 putative iron transport ATP-binding ABC transporter protein.
 
 
 0.874
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
 
 0.735
Pden_1594
PFAM: Polyphosphate kinase; KEGG: rde:RD1_2042 polyphosphate kinase.
       0.570
Pden_1598
KEGG: mes:Meso_4007 hypothetical protein.
  
  
 0.560
Pden_1256
PFAM: ABC-3 protein; KEGG: rsp:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD.
  
  
 
0.528
Pden_1257
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: sme:SMc02507 putative iron transport system membrane ABC transporter protein.
  
  
 
0.512
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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