STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1706KEGG: pfo:Pfl_2972 quinohemoprotein amine dehydrogenase, subunit beta. (358 aa)    
Predicted Functional Partners:
Pden_1703
KEGG: pfo:Pfl_2975 quinohemoprotein amine dehydrogenase, 60 kDa subunit.
 
 0.999
Pden_1705
KEGG: pfo:Pfl_2973 hypothetical protein.
 
 
   0.996
Pden_1707
KEGG: pfo:Pfl_2971 hypothetical protein.
 
    0.951
Pden_1704
PFAM: Radical SAM domain protein; KEGG: pfo:Pfl_2974 radical SAM.
 
     0.949
Pden_1708
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_4134 ABC transporter, ATP-binding protein, MsbA family.
 
     0.935
Pden_1702
KEGG: pfl:PFL_4132 PimS2 protein.
 
     0.890
Pden_0893
PFAM: Di-haem cytochrome c peroxidase; KEGG: sil:SPO0330 cytochrome c peroxidase.
  
 
 0.636
Pden_2387
PFAM: condensation domain protein; KEGG: bmb:BruAb2_0017 hypothetical enterobactin synthetase, component F.
  
    0.506
Pden_2564
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: stm:STM0588 enterobactin synthetase, component F (nonribosomal peptide synthetase).
  
    0.506
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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