STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2452PFAM: OmpA/MotB domain protein; KEGG: rsp:RSP_3486 possible outer membrane protein, OmpA family. (463 aa)    
Predicted Functional Partners:
Pden_2444
PFAM: protein of unknown function DUF877; KEGG: rsp:RSP_3478 hypothetical protein.
 
  
 0.996
Pden_2450
KEGG: rsp:RSP_3484 hypothetical protein.
 
  
 0.996
Pden_2443
PFAM: Uncharacterized conserved protein UCP028301; KEGG: rsp:RSP_3477 hypothetical protein.
 
  
 0.994
Pden_2447
PFAM: protein of unknown function DUF879; KEGG: rsp:RSP_3481 hypothetical protein.
 
  
 0.994
Pden_2451
PFAM: protein of unknown function DUF876; KEGG: rsp:RSP_3485 hypothetical protein.
 
  
 0.993
Pden_2454
KEGG: rsp:RSP_3488 hypothetical protein.
 
  
 0.993
Pden_2446
PFAM: protein of unknown function DUF1316; KEGG: rsp:RSP_3480 hypothetical protein.
 
  
 0.991
Pden_2448
PFAM: protein of unknown function DUF1305; KEGG: mlo:mlr2343 hypothetical protein.
 
  
 0.989
Pden_2445
PFAM: protein of unknown function DUF796; KEGG: rsp:RSP_3479 hypothetical protein.
 
  
 0.984
Pden_2453
PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: rsp:RSP_3487 hypothetical protein.
 
 
 0.982
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.