STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2772PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_1373 major facilitator superfamily (MFS) transporter. (397 aa)    
Predicted Functional Partners:
Pden_2773
PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_1374 putative lipopolysaccharide core biosynthesis mannosyltransferase protein.
 
     0.835
Pden_2774
KEGG: rsp:RSP_1375 hypothetical protein.
       0.813
asd
Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.693
Pden_2763
KEGG: sil:SPO3430 outer membrane porin.
  
   
 0.543
Pden_2776
KEGG: sit:TM1040_3460 conserved hypothetical protein.
 
     0.477
Pden_2771
TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: hpy:HP1285 conserved hypothetical secreted protein.
       0.474
Pden_0539
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: sit:TM1040_2311 conserved hypothetical protein.
  
     0.461
Pden_4100
KEGG: rsp:RSP_1972 hypothetical protein.
  
     0.453
Pden_2770
PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_1372 major facilitator superfamily (MFS) transporter.
 
     0.449
Pden_1322
KEGG: sil:SPO0459 hypothetical protein.
  
     0.446
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.