node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplS | rpmE | Pden_3884 | Pden_3885 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.998 |
rplS | rpoC | Pden_3884 | Pden_0749 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
rplS | rpsB | Pden_3884 | Pden_3726 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein S2; KEGG: rsp:RSP_2860 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.995 |
rplS | rpsG | Pden_3884 | Pden_0754 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
rplS | rpsI | Pden_3884 | Pden_2970 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein S9; KEGG: rsp:RSP_0021 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.995 |
rplS | rpsJ | Pden_3884 | Pden_0758 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.994 |
rplS | rpsK | Pden_3884 | Pden_0783 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.994 |
rplS | rpsL | Pden_3884 | Pden_0753 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.989 |
rplS | rpsN | Pden_3884 | Pden_0772 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.983 |
rplS | rpsP | Pden_3884 | Pden_3881 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein S16; KEGG: rde:RD1_1311 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rpmE | rplS | Pden_3885 | Pden_3884 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.998 |
rpmE | rpoC | Pden_3885 | Pden_0749 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.985 |
rpmE | rpsB | Pden_3885 | Pden_3726 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | PFAM: ribosomal protein S2; KEGG: rsp:RSP_2860 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.966 |
rpmE | rpsG | Pden_3885 | Pden_0754 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.968 |
rpmE | rpsI | Pden_3885 | Pden_2970 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | PFAM: ribosomal protein S9; KEGG: rsp:RSP_0021 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.982 |
rpmE | rpsJ | Pden_3885 | Pden_0758 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.948 |
rpmE | rpsK | Pden_3885 | Pden_0783 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.947 |
rpmE | rpsL | Pden_3885 | Pden_0753 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.979 |
rpmE | rpsN | Pden_3885 | Pden_0772 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.928 |
rpmE | rpsP | Pden_3885 | Pden_3881 | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | PFAM: ribosomal protein S16; KEGG: rde:RD1_1311 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |