STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3922Transcriptional regulator, IclR family; PFAM: regulatory protein, DeoR; regulatory proteins, IclR; KEGG: sil:SPOA0143 transcriptional regulator, IclR family (279 aa)    
Predicted Functional Partners:
Pden_3919
D-3-hydroxyaspartate aldolase; PFAM: alanine racemase domain protein; KEGG: mes:Meso_4367 alanine racemase-like
 
     0.713
Pden_3918
PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: mes:Meso_4368 ornithine cyclodeaminase/mu-crystallin
 
     0.654
Pden_3921
Serine-glyoxylate aminotransferase apoenzyme; PFAM: aminotransferase, class V; KEGG: mes:Meso_3308 aminotransferase, class V
 
     0.649
Pden_3920
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sil:SPOA0145 pyridoxal-phosphate dependent enzyme
 
     0.631
Pden_3923
annotation not available
       0.534
Pden_0188
PFAM: regulatory proteins, IclR; KEGG: bps:BPSS2127 IclR transcriptional regulator protein
  
     0.523
Pden_3915
5-hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: rde:RD1_4150 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily
 
     0.480
Pden_3916
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sil:SPO2957 hydroxydechloroatrazine ethylaminohydrolase
       0.435
Pden_3917
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sme:SMc02512 putative permease transmembrane protein
       0.427
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans, Paracoccus denitrificans PD1222
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