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pepQ protein (Shewanella putrefaciens) - STRING interaction network
"pepQ" - Xaa-Pro dipeptidase in Shewanella putrefaciens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepQXaa-Pro dipeptidase; Splits dipeptides with a prolyl residue in the C- terminal position (440 aa)    
Predicted Functional Partners:
ABP73751.1
PFAM- protein of unknown function UPF0029; KEGG- shm-Shewmr7_0018 protein of unknown function UPF0029 (204 aa)
   
 
  0.879
ABP73752.1
Trk system potassium uptake protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA (485 aa)
            0.644
ABP73753.1
KEGG- shm-Shewmr7_0020 protoporphyrinogen oxidase (174 aa)
       
  0.629
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (689 aa)
   
 
  0.582
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (116 aa)
     
        0.546
pgi
PFAM- phosphoglucose isomerase (PGI); KEGG- she-Shewmr4_2968 glucose-6-phosphate isomerase; Belongs to the GPI family (545 aa)
     
        0.538
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (922 aa)
   
   
  0.512
ABP75027.1
PFAM- peptidase M1, membrane alanine aminopeptidase; KEGG- son-SO1561 peptidase, M1 family (612 aa)
   
 
  0.503
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP (352 aa)
     
   
  0.500
ABP76035.1
PFAM- peptidase M1, membrane alanine aminopeptidase; KEGG- shm-Shewmr7_2339 peptidase M1, membrane alanine aminopeptidase (652 aa)
   
 
  0.487
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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