STRINGSTRING
ABP73761.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP73761.1" - PFAM: Peptidoglycan-binding LysM in Shewanella putrefaciens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP73761.1PFAM- Peptidoglycan-binding LysM; KEGG- shm-Shewmr7_0028 peptidoglycan-binding LysM (374 aa)    
Predicted Functional Partners:
ABP77416.1
PFAM- Pilus assembly protein, PilQ; KEGG- shm-Shewmr7_0245 pilus assembly protein, PilQ (172 aa)
   
      0.890
ABP77418.1
PFAM- Fimbrial assembly family protein; KEGG- shm-Shewmr7_0243 fimbrial assembly family protein (194 aa)
   
      0.888
ABP77417.1
PFAM- Pilus assembly protein, PilO; KEGG- shm-Shewmr7_0244 pilus assembly protein, PilO (208 aa)
   
      0.887
ABP77419.1
TIGRFAM- type IV pilus assembly protein PilM; KEGG- son-SO0281 type IV pilus biogenesis protein PilM (359 aa)
   
      0.884
ABP77415.1
TIGRFAM- type IV pilus secretin PilQ; PFAM- type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG- she-Shewmr4_3699 type IV pilus secretin PilQ (683 aa)
   
      0.878
ABP73762.1
TIGRFAM- DNA protecting protein DprA; PFAM- SMF family protein; KEGG- she-Shewmr4_0031 DNA protecting protein DprA (340 aa)
   
   
  0.852
ABP75829.1
PFAM- protein of unknown function DUF58; KEGG- shm-Shewmr7_1855 protein of unknown function DUF58 (354 aa)
 
          0.766
ABP75830.1
PFAM- transglutaminase domain protein; KEGG- son-SO2150 transglutaminase family protein (709 aa)
   
          0.737
smg
Protein Smg homolog; PFAM- protein of unknown function DUF494; KEGG- son-SO0035 Smg protein; Belongs to the Smg family (157 aa)
              0.720
ABP75933.1
KEGG- shm-Shewmr7_1738 type IV pilus biogenesis protein PilZ (108 aa)
   
        0.715
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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