STRINGSTRING
ABP73764.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP73764.1" - PFAM: DNA topoisomerase, type IA, zn finger domain protein in Shewanella putrefaciens
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ABP73764.1PFAM- DNA topoisomerase, type IA, zn finger domain protein; KEGG- shm-Shewmr7_0031 DNA topoisomerase, type IA, zn finger domain protein (189 aa)    
Predicted Functional Partners:
tsaC
Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate (188 aa)
 
        0.918
ABP73762.1
TIGRFAM- DNA protecting protein DprA; PFAM- SMF family protein; KEGG- she-Shewmr4_0031 DNA protecting protein DprA (340 aa)
            0.771
smg
Protein Smg homolog; PFAM- protein of unknown function DUF494; KEGG- son-SO0035 Smg protein; Belongs to the Smg family (157 aa)
   
        0.684
hemF
Oxygen-dependent coproporphyrinogen-III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (302 aa)
              0.619
topB
DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (708 aa)
       
  0.581
ABP73761.1
PFAM- Peptidoglycan-binding LysM; KEGG- shm-Shewmr7_0028 peptidoglycan-binding LysM (374 aa)
              0.581
ABP73760.1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (170 aa)
   
        0.527
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus (318 aa)
   
   
  0.526
ABP73758.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (429 aa)
              0.477
ABP73757.1
PFAM- TrkA-N domain protein; TrkA-C domain protein; KEGG- shm-Shewmr7_0024 TrkA-N domain protein (469 aa)
              0.447
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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