STRINGSTRING
rlmJ protein (Shewanella putrefaciens) - STRING interaction network
"rlmJ" - Ribosomal RNA large subunit methyltransferase J in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmJRibosomal RNA large subunit methyltransferase J; Specifically methylates the adenine in position 2030 of 23S rRNA (281 aa)    
Predicted Functional Partners:
ABP74755.1
KEGG- son-SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM- CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM- CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family (283 aa)
   
   
  0.646
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (268 aa)
 
     
  0.640
rsmC
Ribosomal RNA small subunit methyltransferase C; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family (347 aa)
   
   
  0.604
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (282 aa)
         
  0.567
ABP74021.1
Ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle (221 aa)
           
  0.531
ABP73835.1
Diguanylate cyclase/phosphodiesterase; PFAM- GGDEF domain containing protein; EAL domain protein; KEGG- pat-Patl_2246 diguanylate cyclase/phosphodiesterase (754 aa)
              0.526
hslO
33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress (286 aa)
   
        0.505
ABP73833.1
KEGG- she-Shewmr4_1960 hypothetical protein (54 aa)
              0.498
rsmJ
Ribosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (259 aa)
         
  0.478
rlmF
Ribosomal RNA large subunit methyltransferase F; Specifically methylates the adenine in position 1618 of 23S rRNA (357 aa)
           
  0.477
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
Server load: low (11%) [HD]