STRINGSTRING
ABP73950.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP73950.1" - PFAM: transposase, IS4 family protein in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP73950.1PFAM- transposase, IS4 family protein; KEGG- sgl-SG1040 transposase (307 aa)    
Predicted Functional Partners:
ABP73951.1
PFAM- IS1 transposase; KEGG- sec-SC1834 IS1 transposase (113 aa)
 
          0.726
ABP73952.1
PFAM- Insertion element protein; KEGG- sec-SC062 transposition protein (91 aa)
 
          0.714
ABP73949.1
PFAM- PTS system sorbose subfamily IIB component; KEGG- bsu-BG10317 PTS fructose-specific enzyme IIB component (104 aa)
              0.643
ABP73948.1
TIGRFAM- PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM- phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG- bld-BLi02829 PTS fructose-specific enzyme IIC component; RBL00186 (265 aa)
              0.622
ABP73947.1
TIGRFAM- PTS system, mannose/fructose/sorbose family, IID subunit; PFAM- PTS system mannose/fructose/sorbose family IID component; KEGG- bsu-BG10319 PTS fructose-specific enzyme IID component (286 aa)
              0.619
ABP73953.1
PFAM- phage integrase family protein; KEGG- ecc-c0291 hypothetical protein (200 aa)
 
          0.511
ABP73954.1
IS630 ORF; KEGG- sbo-SBO_P069 IS630 ORF (343 aa)
 
     
  0.434
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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