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ABP74002.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74002.1" - Uncharacterized protein in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74002.1Uncharacterized protein; KEGG- spt-SPA2166 possible copper-binding protein (149 aa)    
Predicted Functional Partners:
ABP74001.1
PFAM- peptidase M23B; KEGG- stm-STM1890 putative peptidase (245 aa)
              0.421
ABP75239.1
PFAM- DNA polymerase B, exonuclease; DNA polymerase B region; SMART- DNA-directed DNA polymerase B; KEGG- shm-Shewmr7_2537 DNA polymerase B region (797 aa)
     
        0.406
trmJ
tRNA (cytidine/uridine-2’-O-)-methyltransferase TrmJ; Catalyzes the formation of 2’O-methylated cytidine (Cm32) or 2’O-methylated uridine (Um32) at position 32 in tRNA (241 aa)
     
        0.402
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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