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ABP74184.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74184.1" - PFAM: OmpA/MotB domain protein in Shewanella putrefaciens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74184.1PFAM- OmpA/MotB domain protein; KEGG- she-Shewmr4_0916 OmpA/MotB domain protein; Belongs to the ompA family (481 aa)    
Predicted Functional Partners:
ABP74185.1
annotation not available (117 aa)
              0.567
ABP75877.1
TIGRFAM- lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM- protein of unknown function DUF214; KEGG- shm-Shewmr7_1812 lipoprotein releasing system, transmembrane protein, LolC/E family (410 aa)
   
 
  0.554
rpmF
TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- shm-Shewmr7_2470 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family (56 aa)
     
      0.546
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5’-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (201 aa)
   
 
  0.537
ABP75875.1
TIGRFAM- lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM- protein of unknown function DUF214; KEGG- she-Shewmr4_1734 lipoprotein releasing system, transmembrane protein, LolC/E family (416 aa)
   
 
  0.534
ABP76857.1
PFAM- protein of unknown function DUF214; KEGG- son-SO0856 putative ABC transport system permease protein (878 aa)
     
 
  0.531
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (130 aa)
     
      0.522
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (101 aa)
     
 
  0.522
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (92 aa)
     
      0.521
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (110 aa)
     
      0.519
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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