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rpmB protein (Shewanella putrefaciens) - STRING interaction network
"rpmB" - PFAM: ribosomal protein L28 in Shewanella putrefaciens
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpmBPFAM- ribosomal protein L28; KEGG- shm-Shewmr7_0360 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (78 aa)    
Predicted Functional Partners:
rpmG
PFAM- ribosomal protein L33; KEGG- shm-Shewmr7_0361 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family (57 aa)
 
 
  0.998
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site (101 aa)
 
 
  0.991
rplQ
PFAM- ribosomal protein L17; KEGG- son-SO0257 50S ribosomal protein L17 (131 aa)
   
 
  0.989
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (130 aa)
   
 
  0.988
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
 
 
  0.987
rplI
50S ribosomal protein L9; Binds to the 23S rRNA (150 aa)
   
 
  0.986
rpmF
TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- shm-Shewmr7_2470 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family (56 aa)
 
 
  0.986
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (274 aa)
     
 
  0.983
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (103 aa)
     
 
  0.983
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (117 aa)
   
 
  0.982
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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