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ABP74329.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74329.1" - PFAM: protein of unknown function DUF331 in Shewanella putrefaciens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74329.1PFAM- protein of unknown function DUF331; KEGG- shm-Shewmr7_0498 protein of unknown function DUF331 (78 aa)    
Predicted Functional Partners:
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5’-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (201 aa)
       
      0.526
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (230 aa)
       
      0.526
rpsU
PFAM- ribosomal protein S21; KEGG- shm-Shewmr7_2987 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
       
      0.526
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
       
      0.526
rplQ
PFAM- ribosomal protein L17; KEGG- son-SO0257 50S ribosomal protein L17 (131 aa)
     
      0.524
rpmJ
PFAM- ribosomal protein L36; KEGG- shm-Shewmr7_0215 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (37 aa)
       
      0.523
rpmI
PFAM- ribosomal protein L35; KEGG- sfr-Sfri_2026 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (64 aa)
       
      0.523
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (142 aa)
       
      0.522
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (166 aa)
       
      0.522
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (156 aa)
       
      0.522
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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