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deaD protein (Shewanella putrefaciens) - STRING interaction network
"deaD" - ATP-dependent RNA helicase DeaD in Shewanella putrefaciens
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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deaDATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation (640 aa)    
Predicted Functional Partners:
ABP75746.1
KEGG- shm-Shewmr7_2030 ATP-dependent DNA helicase, RecQ family; TIGRFAM- ATP-dependent DNA helicase, RecQ family; PFAM- helicase domain protein; DEAD/DEAH box helicase domain protein; SMART- DEAD-like helicases-like (659 aa)
 
 
0.846
ABP74201.1
KEGG- she-Shewmr4_3590 ATP-dependent DNA helicase RecQ; TIGRFAM- ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM- helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART- DEAD-like helicases-like (607 aa)
 
 
0.842
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (166 aa)
   
 
  0.572
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (699 aa)
   
 
  0.540
ftsJ
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (209 aa)
     
 
  0.538
ABP75763.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (555 aa)
     
 
  0.525
ABP74366.1
KEGG- she-Shewmr4_3425 hypothetical protein (123 aa)
              0.523
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs; Belongs to the RNase E/G family. RNase E subfamily (1128 aa)
     
 
  0.522
obg
GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family (388 aa)
   
      0.519
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (499 aa)
   
 
  0.518
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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