STRINGSTRING
ABP74446.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74446.1" - PFAM: ABC transporter related in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Experiments
Databases
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[Homology]
Score
ABP74446.1PFAM- ABC transporter related; SMART- AAA ATPase; KEGG- shm-Shewmr7_3348 ABC transporter related (243 aa)    
Predicted Functional Partners:
ABP74907.1
PFAM- permease YjgP/YjgQ family protein; KEGG- she-Shewmr4_2826 permease YjgP/YjgQ family protein (370 aa)
 
  0.992
ABP74908.1
PFAM- permease YjgP/YjgQ family protein; KEGG- shm-Shewmr7_2907 permease YjgP/YjgQ family protein (352 aa)
 
 
  0.991
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (184 aa)
 
   
  0.978
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA; Belongs to the LptC family (186 aa)
   
 
  0.974
ABP74449.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family (183 aa)
   
  0.954
ABP74450.1
Arabinose 5-phosphate isomerase; KEGG- shm-Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM- KpsF/GutQ family protein; PFAM- CBS domain containing protein; sugar isomerase (SIS) (325 aa)
        0.945
ABP74445.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (491 aa)
 
   
  0.761
lpxA
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (256 aa)
 
   
  0.725
lpxD
UDP-3-O-acylglucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell; Belongs to the transferase hexapeptide repeat family. LpxD subfamily (341 aa)
 
   
  0.700
ABP74443.1
TIGRFAM- PTS IIA-like nitrogen-regulatory protein PtsN; PFAM- phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG- shm-Shewmr7_3351 PTS IIA-like nitrogen-regulatory protein PtsN (147 aa)
 
        0.698
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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