STRINGSTRING
ABP74452.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74452.1" - PFAM: protein of unknown function DUF140 in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74452.1PFAM- protein of unknown function DUF140; KEGG- son-SO3953 putative membrane protein (261 aa)    
Predicted Functional Partners:
ABP74451.1
PFAM- ABC transporter related; SMART- AAA ATPase; KEGG- shm-Shewmr7_3343 ABC transporter related (272 aa)
 
  0.999
ABP74453.1
PFAM- Mammalian cell entry related domain protein; KEGG- son-SO3952 mce-related protein (157 aa)
  0.999
ABP74454.1
PFAM- toluene tolerance family protein; KEGG- shm-Shewmr7_3340 toluene tolerance family protein (221 aa)
 
  0.982
ABP74455.1
KEGG- son-SO3950 SpoIIAA family protein (94 aa)
     
  0.977
ABP74456.1
PFAM- BolA family protein; KEGG- shm-Shewmr7_3338 BolA family protein; Belongs to the BolA/IbaG family (85 aa)
 
        0.936
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily (419 aa)
   
   
  0.831
ABP76268.1
PFAM- VacJ family lipoprotein; KEGG- shm-Shewmr7_1378 VacJ family lipoprotein (260 aa)
 
     
  0.699
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (325 aa)
     
        0.652
ABP76888.1
TIGRFAM- TonB-dependent siderophore receptor; PFAM- TonB-dependent receptor; TonB-dependent receptor, plug; KEGG- shm-Shewmr7_0651 TonB-dependent siderophore receptor (653 aa)
     
        0.602
ABP74450.1
Arabinose 5-phosphate isomerase; KEGG- shm-Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM- KpsF/GutQ family protein; PFAM- CBS domain containing protein; sugar isomerase (SIS) (325 aa)
 
        0.492
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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