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ABP74478.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74478.1" - PFAM: Sel1 domain protein repeat-containing protein in Shewanella putrefaciens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74478.1PFAM- Sel1 domain protein repeat-containing protein; KEGG- shm-Shewmr7_0682 Sel1 domain protein repeat-containing protein (218 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (807 aa)
   
        0.795
ABP76325.1
KEGG- shm-Shewmr7_1322 hypothetical protein (210 aa)
   
     
  0.784
ABP75970.1
KEGG- she-Shewmr4_1586 hypothetical protein (259 aa)
   
          0.780
ABP75326.1
PFAM- OmpA/MotB domain protein; KEGG- she-Shewmr4_2374 OmpA/MotB domain protein (289 aa)
   
     
  0.773
ABP75878.1
KEGG- son-SO2256 hypothetical protein (201 aa)
   
          0.772
ABP76324.1
PFAM- protein of unknown function DUF400; KEGG- son-SO3256 hypothetical protein (149 aa)
   
     
  0.768
rlmB
23S rRNA (guanosine-2’-O-)-methyltransferase RlmB; Specifically methylates the ribose of guanosine 2251 in 23S rRNA (246 aa)
   
        0.760
ABP76534.1
PFAM- type IV pilus assembly PilZ; KEGG- she-Shewmr4_1044 type IV pilus assembly PilZ (795 aa)
   
          0.754
ABP76752.1
KEGG- shm-Shewmr7_0904 hypothetical protein (279 aa)
   
          0.753
ABP75506.1
KEGG- shm-Shewmr7_2233 hypothetical protein (455 aa)
 
          0.748
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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