STRINGSTRING
ABP74538.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74538.1" - PFAM: protein of unknown function DUF819 in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74538.1PFAM- protein of unknown function DUF819; KEGG- shm-Shewmr7_0802 protein of unknown function DUF819 (415 aa)    
Predicted Functional Partners:
kdsA
TIGRFAM- 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM- DAHP synthetase I/KDSA; KEGG- shm-Shewmr7_0803 2-dehydro-3-deoxyphosphooctonate aldolase (282 aa)
              0.699
ABP76234.1
PFAM- amidohydrolase; KEGG- shm-Shewmr7_1415 amidohydrolase (1029 aa)
   
          0.621
ABP76235.1
KEGG- son-SO3149 hypothetical protein (438 aa)
   
          0.613
ABP77011.1
KEGG- son-SO0578 hypothetical protein (800 aa)
 
          0.577
ABP74537.1
KEGG- shm-Shewmr7_0801 hypothetical protein (262 aa)
              0.551
ABP74536.1
PFAM- Invasion gene expression up-regulator, SirB; KEGG- shm-Shewmr7_0800 invasion gene expression up-regulator, SirB (131 aa)
              0.548
ABP76944.1
PFAM- Phosphoglycerate mutase; KEGG- son-SO0749 hypothetical protein (201 aa)
   
          0.534
ABP74372.1
PFAM- peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG- shm-Shewmr7_3422 peptidase S9, prolyl oligopeptidase active site domain protein (826 aa)
 
          0.515
ABP73745.1
Amidohydrolase; PFAM- peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG- she-Shewmr4_0011 amidohydrolase (1062 aa)
   
          0.425
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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