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ABP74564.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74564.1" - Pseudouridine synthase in Shewanella putrefaciens
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second shell of interactors
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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ABP74564.1Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (226 aa)    
Predicted Functional Partners:
dusC
tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs; Belongs to the dus family (317 aa)
   
   
  0.654
ABP74563.1
PFAM- regulatory protein, AsnC/Lrp family; KEGG- shm-Shewmr7_0826 transcriptional regulator, AsnC family (164 aa)
              0.650
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily (472 aa)
   
 
  0.623
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (261 aa)
   
   
  0.604
ABP76119.1
Pseudouridine synthase; PFAM- RNA-binding S4 domain protein; pseudouridine synthase; KEGG- shm-Shewmr7_1533 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family (291 aa)
   
 
  0.589
truD
tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs (360 aa)
     
   
  0.585
ABP74565.1
PFAM- peptidase U32; KEGG- shm-Shewmr7_0828 peptidase U32 (638 aa)
     
      0.584
mnmE
tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family (453 aa)
 
   
  0.554
ABP75952.1
PFAM- pseudouridine synthase; KEGG- she-Shewmr4_1605 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family (270 aa)
 
  0.535
ABP74522.1
Pseudouridine synthase; PFAM- RNA-binding S4 domain protein; pseudouridine synthase; KEGG- shm-Shewmr7_0788 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family (229 aa)
 
  0.507
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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