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xerD protein (Shewanella putrefaciens) - STRING interaction network
"xerD" - TIGRFAM: tyrosine recombinase XerD in Shewanella putrefaciens
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
xerDTIGRFAM- tyrosine recombinase XerD; PFAM- phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG- shm-Shewmr7_3228 tyrosine recombinase XerD (300 aa)    
Predicted Functional Partners:
ABP74620.1
Thiol-disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (241 aa)
 
        0.796
ABP74621.1
TIGRFAM- single-stranded-DNA-specific exonuclease RecJ; PFAM- phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG- shm-Shewmr7_3226 single-stranded-DNA-specific exonuclease RecJ (584 aa)
 
   
  0.779
ABP75732.1
DNA translocase FtsK; PFAM- cell divisionFtsK/SpoIIIE; KEGG- shm-Shewmr7_2013 cell divisionFtsK/SpoIIIE (896 aa)
 
 
 
  0.736
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (302 aa)
   
 
0.656
lysS
Lysine--tRNA ligase; TIGRFAM- lysyl-tRNA synthetase; PFAM- tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG- shm-Shewmr7_3196 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family (500 aa)
          0.594
ABP74618.1
Branched-chain amino acid transport system carrier protein; Component of the transport system for branched-chain amino acids (467 aa)
              0.589
ABP77703.1
PFAM- phage integrase family protein; KEGG- pgi-PG0874 mobilizable transposon, int protein; Belongs to the ’phage’ integrase family (389 aa)
   
          0.584
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids; Belongs to the RNase HII family (209 aa)
 
     
  0.582
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (922 aa)
 
   
  0.566
ABP74707.1
Trans-hexaprenyltranstransferase; PFAM- Polyprenyl synthetase; KEGG- shm-Shewmr7_3126 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family (331 aa)
 
   
  0.545
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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