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ABP74651.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74651.1" - Pseudouridine synthase in Shewanella putrefaciens
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
ABP74651.1Pseudouridine synthase; PFAM- RNA-binding S4 domain protein; pseudouridine synthase; KEGG- shm-Shewmr7_0952 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family (242 aa)    
Predicted Functional Partners:
ABP74652.1
KEGG- she-Shewmr4_0918 hypothetical protein (232 aa)
              0.845
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (338 aa)
 
   
  0.562
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (488 aa)
 
   
  0.512
ABP74653.1
PFAM- Na+/H+ antiporter NhaC; KEGG- shm-Shewmr7_0954 Na+/H+ antiporter NhaC (445 aa)
              0.489
ABP74021.1
Ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle (221 aa)
 
        0.481
rlmN
Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family (373 aa)
 
 
  0.460
xni
Flap endonuclease Xni; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment (262 aa)
 
        0.459
ABP74650.1
KEGG- son-SO0729 hypothetical protein (84 aa)
              0.427
rsmJ
Ribosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (259 aa)
   
        0.412
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (116 aa)
   
      0.403
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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