STRINGSTRING
ABP74665.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74665.1" - Transcriptional regulator BolA in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74665.1Transcriptional regulator BolA; PFAM- BolA family protein; KEGG- shm-Shewmr7_0970 BolA family protein; Belongs to the BolA/IbaG family (106 aa)    
Predicted Functional Partners:
ABP75413.1
TIGRFAM- glutaredoxin-like protein; PFAM- glutaredoxin; KEGG- shm-Shewmr7_1648 glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily (110 aa)
 
 
  0.726
ABP74664.1
DNA-N1-methyladenine dioxygenase; PFAM- 2OG-Fe(II) oxygenase; KEGG- shm-Shewmr7_0969 2OG-Fe(II) oxygenase (204 aa)
   
        0.673
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins (192 aa)
   
 
  0.666
ABP76598.1
PFAM- Ferritin, Dps family protein; KEGG- shm-Shewmr7_1046 ferritin, Dps family protein; Belongs to the Dps family (155 aa)
     
        0.658
rlmG
Ribosomal RNA large subunit methyltransferase G; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA (402 aa)
         
  0.574
ABP74666.1
TRAP dicarboxylate transporter-DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system (369 aa)
              0.522
rpmA
PFAM- ribosomal protein L27; KEGG- son-SO3651 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (84 aa)
   
        0.507
ABP76928.1
PFAM- 5-formyltetrahydrofolate cyclo-ligase; KEGG- she-Shewmr4_3336 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family (219 aa)
 
 
 
  0.503
csrA
Translational regulator CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5’- UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5’-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s) (65 aa)
   
   
  0.479
rpoS
TIGRFAM- RNA polymerase sigma factor RpoS; PFAM- sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG- son-SO3432 RNA polymerase sigma-38 factor (326 aa)
           
  0.475
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
Server load: low (11%) [HD]