STRINGSTRING
ABP74748.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74748.1" - Pseudouridine synthase in Shewanella putrefaciens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74748.1Pseudouridine synthase; PFAM- RNA-binding S4 domain protein; pseudouridine synthase; KEGG- she-Shewmr4_2997 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family (236 aa)    
Predicted Functional Partners:
ABP74747.1
Transcriptional regulator; PFAM- Helix-turn-helix, type 11 domain protein; KEGG- she-Shewmr4_2998 putative transcriptional regulator (210 aa)
              0.660
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (338 aa)
 
   
  0.511
ABP74564.1
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (226 aa)
 
 
  0.499
ABP74746.1
PFAM- NADPH-dependent FMN reductase; KEGG- shm-Shewmr7_3080 NADPH-dependent FMN reductase (204 aa)
              0.453
ABP74021.1
Ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle (221 aa)
   
        0.412
rsmJ
Ribosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (259 aa)
   
        0.412
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
Server load: low (8%) [HD]