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ABP74778.1 protein (Shewanella putrefaciens) - STRING interaction network
"ABP74778.1" - PFAM: OmpA domain protein transmembrane region-containing protein in Shewanella putrefaciens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74778.1PFAM- OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG- son-SO3545 OmpA family protein; Belongs to the ompA family (366 aa)    
Predicted Functional Partners:
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5’-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (201 aa)
   
 
  0.892
rpsI
PFAM- ribosomal protein S9; KEGG- shm-Shewmr7_0679 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
   
 
  0.892
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
     
      0.885
rpsU
PFAM- ribosomal protein S21; KEGG- shm-Shewmr7_2987 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
     
 
  0.884
rpmI
PFAM- ribosomal protein L35; KEGG- sfr-Sfri_2026 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (64 aa)
   
      0.882
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (230 aa)
     
      0.882
rpmJ
PFAM- ribosomal protein L36; KEGG- shm-Shewmr7_0215 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (37 aa)
     
 
  0.880
rpmH
PFAM- ribosomal protein L34; KEGG- shm-Shewmr7_4035 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (45 aa)
   
      0.878
rpmF
TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- shm-Shewmr7_2470 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family (56 aa)
     
 
  0.875
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (110 aa)
     
      0.874
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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