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rpsU protein (Shewanella putrefaciens) - STRING interaction network
"rpsU" - PFAM: ribosomal protein S21 in Shewanella putrefaciens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsUPFAM- ribosomal protein S21; KEGG- shm-Shewmr7_2987 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)    
Predicted Functional Partners:
rpmH
PFAM- ribosomal protein L34; KEGG- shm-Shewmr7_4035 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (45 aa)
     
 
  0.988
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (88 aa)
   
 
  0.982
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
   
 
  0.981
rpmG
PFAM- ribosomal protein L33; KEGG- shm-Shewmr7_0361 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family (57 aa)
     
 
  0.980
rpsP
PFAM- ribosomal protein S16; KEGG- shm-Shewmr7_2920 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (83 aa)
   
 
  0.980
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
     
 
  0.980
rpmB
PFAM- ribosomal protein L28; KEGG- shm-Shewmr7_0360 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (78 aa)
   
 
  0.976
rpmF
TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- shm-Shewmr7_2470 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family (56 aa)
 
 
  0.975
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA (89 aa)
     
 
  0.975
rpmA
PFAM- ribosomal protein L27; KEGG- son-SO3651 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (84 aa)
   
 
  0.975
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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