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nudH protein (Shewanella putrefaciens) - STRING interaction network
"nudH" - RNA pyrophosphohydrolase in Shewanella putrefaciens
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second shell of interactors
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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nudHRNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (174 aa)    
Predicted Functional Partners:
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2’-deoxyuridine- 5’-monophosphate (dUMP) to 2’-deoxythymidine-5’-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis (264 aa)
 
      0.929
ABP74871.1
PTSINtr with GAF domain, PtsP; TIGRFAM- phosphoenolpyruvate-protein phosphotransferase; PFAM- PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG- she-Shewmr4_2864 PTSINtr with GAF domain, PtsP; Belongs to the PEP-utilizing enzyme family (744 aa)
   
   
  0.888
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (275 aa)
   
 
  0.861
ABP73774.1
KEGG- she-Shewmr4_0043 carboxyl-terminal protease; TIGRFAM- carboxyl-terminal protease; PFAM- PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family (402 aa)
       
  0.729
ABP74872.1
Probable membrane transporter protein; PFAM- protein of unknown function DUF81; KEGG- son-SO1333 hypothetical protein (266 aa)
              0.715
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA (89 aa)
   
 
  0.625
ABP77511.1
PFAM- RNA binding S1 domain protein; SMART- Resolvase, RNase H domain protein fold; KEGG- son-SO4629 hypothetical protein (813 aa)
     
 
  0.604
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (499 aa)
   
 
  0.585
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (156 aa)
   
      0.581
ABP74873.1
Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (268 aa)
   
        0.574
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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