STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP75853.1PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: she:Shewmr4_1755 sulphate transporter. (590 aa)    
Predicted Functional Partners:
ABP74584.1
PFAM: Ankyrin; KEGG: son:SO0908 hypothetical protein.
    
 
 0.758
ABP76987.1
Cytochrome b/b6, N-terminal domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.748
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.707
ABP74935.1
KEGG: shm:Shewmr7_2878 hypothetical protein.
    
   0.585
ABP76889.1
KEGG: son:SO0813 hypothetical protein.
    
   0.585
ABP75384.1
PFAM: cyclic nucleotide-binding; KEGG: son:SO2717 cyclic nucleotide binding protein, putative.
  
     0.515
acpP
Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
   0.465
ABP74178.1
KEGG: son:SO4368 acyl carrier protein, putative.
    
   0.465
ABP75054.1
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_2733 beta-ketoacyl synthase.
    
   0.465
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.465
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.