STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP75999.1PFAM: Uncharacterized conserved protein UCP029143; KEGG: she:Shewmr4_1625 uncharacterized conserved protein UCP029143; Belongs to the UPF0267 family. (103 aa)    
Predicted Functional Partners:
ABP77543.1
PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein.
   
    0.832
ABP76144.1
PFAM: protein of unknown function DUF1097; KEGG: shm:Shewmr7_1506 protein of unknown function DUF1097.
  
     0.771
ABP76004.1
PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein.
  
     0.736
ABP76973.1
KEGG: son:SO4020 transcriptional regulator, LysR family.
  
     0.688
ABP77370.1
PFAM: DsrE family protein; KEGG: shm:Shewmr7_0296 DsrE family protein.
  
     0.657
ABP75907.1
TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: she:Shewmr4_1792 aromatic amino acid transporter.
  
     0.599
frdD
Succinate dehydrogenase subunit D; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.562
napD
NapD family protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
     0.560
ABP74047.1
PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein.
  
     0.535
ABP74645.1
PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: shm:Shewmr7_0948 aromatic amino acid permease.
  
     0.519
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.